Nouvelle version de Trinity

ederisoud · Juillet 20, 2020, 1:01

Hello tout le monde

Pour l'annotation de novo en cours (toujours la même), j'aurais besoin de télécharger dernière version de Trinity (2.11) disponible ici :

Pouvez vous me l'installer également s'il vous plait ?

Merci beaucoup

Emilie

gildaslecorguille · Juillet 22, 2020, 4:13

Bonjour @ederisoud,

Je tente de construire le package Conda pour la version 2.11.0 de Trinity :

github.com/bioconda/bioconda-recipes

Update trinity to 2.11.0

bioconda:master ← bioconda:trinity-2.11.0

opened 08:40AM - 22 Jul 20 UTC

lecorguille

+27 -9

This naive PR is updating the Trinity package to 2.11.0. There is another one h…ttps://github.com/bioconda/bioconda-recipes/pull/21828 that try to update to the 2.10.0. ---- Please read the [guidelines for Bioconda recipes](https://bioconda.github.io/contributor/guidelines.html) before opening a pull request (PR). * If this PR adds or updates a recipe, use "Add" or "Update" appropriately as the first word in its title. * New recipes not directly relevant to the biological sciences need to be submitted to the [conda-forge channel](https://conda-forge.org/docs/) instead of Bioconda. * PRs require reviews prior to being merged. Once your PR is passing tests and ready to be merged, please issue the `@BiocondaBot please add label` command. * Please post questions [on Gitter](https://gitter.im/bioconda/Lobby) or ping `@bioconda/core` in a comment. <details> <summary>Please use the following BiocondaBot commands:</summary> Everyone has access to the following BiocondaBot commands, which can be given in a comment: <table> <tr> <td><code>@BiocondaBot please update</code></td> <td>Merge the master branch into a PR.</td> </tr> <tr> <td><code>@BiocondaBot please add label</code></td> <td>Add the <code>please review & merge</code> label.</td> </tr> <tr> <td><code>@BiocondaBot please fetch artifacts</code></td> <td>Post links to CI-built packages/containers. <br />You can use this to test packages locally.</td> </tr> </table> For members of the Bioconda project, the following command is also available: <table> <tr> <td><code>@BiocondaBot please merge</code></td> <td>Upload built packages/containers and merge a PR. <br />Someone must approve a PR first! <br />This reduces CI build time by reusing built artifacts.</td> </tr> </table> Also, the bot watches for comments from non-members that include `@bioconda/<team>` and will automatically re-post them to notify the addressed `<team>`. </details>

ederisoud · Juillet 24, 2020, 7:49

merci beaucoup !
Emilie

gildaslecorguille · Juillet 24, 2020, 8:37

At least :

module load trinity-2.11.0

(Merci @nc-support pour le MR)

ederisoud · Juillet 25, 2020, 12:59

Chouette !

Merci beaucoup !

Emilie