# Problem while running an old version of tool in XCMS workflow **URL:** \ **Category:** Instance\ **Created:** [Décembre 31, 2020, 6:47 UTC](https://community.france-bioinformatique.fr/t/problem-while-running-an-old-version-of-tool-in-xcms-workflow/878 "2020-12-31T18:47:42Z")\ **Posts on this page:** 8\ **Page:** 1
**Author:** ![melpetera](https://community.france-bioinformatique.fr/user_avatar/community.france-bioinformatique.fr/melpetera/32/247_2.png) [@melpetera](https://community.france-bioinformatique.fr/u/melpetera)\ **Post date:** [Décembre 31, 2020, 6:47 UTC](https://community.france-bioinformatique.fr/t/problem-while-running-an-old-version-of-tool-in-xcms-workflow/878/1 "2020-12-31T18:47:43Z")
Hi there, As we say in French "Le cordonnier est souvent le plus mal chaussé", so here I am on 31st of December. While performing some final migration from old to new W4M instance, I ran into a problem with one of my job: ![image](https://community.france-bioinformatique.fr/uploads/default/original/1X/dde12425d6ed34ce60706cf6774e436024e6eacf.png) It works just fine with the latest version of xcms\_process\_history so this is no major issue in my case, but still I am reporting it here since this means something may have been missed during the installation process for this tool version.. If you need further information, do not hesitate to ask. Mélanie ---
**Author:** ![dbenaben](https://community.france-bioinformatique.fr/user_avatar/community.france-bioinformatique.fr/dbenaben/32/43_2.png) [@dbenaben](https://community.france-bioinformatique.fr/u/dbenaben)\ **Post date:** [Mars 3, 2021, 9:00 UTC](https://community.france-bioinformatique.fr/t/problem-while-running-an-old-version-of-tool-in-xcms-workflow/878/2 "2021-03-03T09:00:45Z")
Hello, I think previous version need libnetcdf. But if It works fine with the latest version of xcms\_process\_history, maybe we can consider this resolved ? @gildaslecorguille ---
**Author:** ![gildaslecorguille](https://community.france-bioinformatique.fr/user_avatar/community.france-bioinformatique.fr/gildaslecorguille/32/6_2.png) [@gildaslecorguille](https://community.france-bioinformatique.fr/u/gildaslecorguille)\ **Post date:** [Mars 3, 2021, 9:14 UTC](https://community.france-bioinformatique.fr/t/problem-while-running-an-old-version-of-tool-in-xcms-workflow/878/3 "2021-03-03T09:14:21Z")
Thanks @dbenaben for the UP! We try as much as possible to allow to run old version of the tools. I will indeed look at libnetcdf like here: > [@CAMERA: Conda dependency seemingly installed but failed to build job environment](https://community.france-bioinformatique.fr/t/camera-conda-dependency-seemingly-installed-but-failed-to-build-job-environment/780/3): > > Fix v > > > **For records** > > > > $ /shared/mfs/data/galaxy/mutable-data/dependencies/\_conda/bin/conda create --quiet --override-channels --channel iuc --channel conda-forge --channel bioconda --channel defaults --name mulled-v1-bc992e514690c52fa4dc473ae4933b4a990f1f279f269d1f17fa2031c5225d95 r-snow bioconductor-camera=1.26.0 bioconductor-multtest r-batch graphicsmagick bioconductor-biobase==2.34.0 $ source /shared/mfs/data/galaxy/mutable-data/dependencies/\_conda/bin/activate /shared/mfs/data/galaxy/mutable-d… ---
**Author:** ![gildaslecorguille](https://community.france-bioinformatique.fr/user_avatar/community.france-bioinformatique.fr/gildaslecorguille/32/6_2.png) [@gildaslecorguille](https://community.france-bioinformatique.fr/u/gildaslecorguille)\ **Post date:** [Mars 3, 2021, 9:36 UTC](https://community.france-bioinformatique.fr/t/problem-while-running-an-old-version-of-tool-in-xcms-workflow/878/4 "2021-03-03T09:36:36Z")
✌ 😛 ✌ ---
**Author:** ![melpetera](https://community.france-bioinformatique.fr/user_avatar/community.france-bioinformatique.fr/melpetera/32/247_2.png) [@melpetera](https://community.france-bioinformatique.fr/u/melpetera)\ **Post date:** [Mars 3, 2021, 2:35 UTC](https://community.france-bioinformatique.fr/t/problem-while-running-an-old-version-of-tool-in-xcms-workflow/878/5 "2021-03-03T14:35:03Z")
Thank you guys 🙂 May I take this opportunity to highlight another problem I ran into with an old version of an XCMS tool? The post title matches, right? Right? This time it is about xcms.xcmsSet Merger ( **xcms findChromPeaks Merger** in Galaxy version **1.0.0** ), that leads to a green dataset that is empty due to the following: > /shared/ifbstor1/galaxy/jobs/000/468/468275/tool\_script.sh: line 9: Rscript: command not found Additional info (not sure it is needed, but just in case): ![image](https://community.france-bioinformatique.fr/uploads/default/original/1X/1763c49bd969768d34a6e2e130aaa89d5bb199f0.png) Thank you in advance, Mélanie the XCMS archaeologist ---
**Author:** ![gildaslecorguille](https://community.france-bioinformatique.fr/user_avatar/community.france-bioinformatique.fr/gildaslecorguille/32/6_2.png) [@gildaslecorguille](https://community.france-bioinformatique.fr/u/gildaslecorguille)\ **Post date:** [Mars 9, 2021, 8:11 UTC](https://community.france-bioinformatique.fr/t/problem-while-running-an-old-version-of-tool-in-xcms-workflow/878/6 "2021-03-09T08:11:25Z")
Je m'en occupe ---
**Author:** ![gildaslecorguille](https://community.france-bioinformatique.fr/user_avatar/community.france-bioinformatique.fr/gildaslecorguille/32/6_2.png) [@gildaslecorguille](https://community.france-bioinformatique.fr/u/gildaslecorguille)\ **Post date:** [Mars 9, 2021, 1:29 UTC](https://community.france-bioinformatique.fr/t/problem-while-running-an-old-version-of-tool-in-xcms-workflow/878/7 "2021-03-09T13:29:35Z")
@melpetera est-ce tu peux retenter ? ---
**Author:** ![melpetera](https://community.france-bioinformatique.fr/user_avatar/community.france-bioinformatique.fr/melpetera/32/247_2.png) [@melpetera](https://community.france-bioinformatique.fr/u/melpetera)\ **Post date:** [Mars 19, 2021, 2:00 UTC](https://community.france-bioinformatique.fr/t/problem-while-running-an-old-version-of-tool-in-xcms-workflow/878/8 "2021-03-19T14:00:38Z")
Désolée pour le délai. C'est tout bon, ça marche 😉 Merci 👍🏼