Bonjour @team.software
Je vous souhaite tout d'abord mes meilleurs vœux pour 2022, on ne pourra que faire mieux !! (enfin j'espère :-D)
Je viens de lancer pyani sur le core cluster et j'ai une erreur que je ne comprends pas ...
je lance ma commande
srun average_nucleotide_identity.py -o ${folder_pyani} -i ${folder_genome} -v -g
et le slurm me met :
Traceback (most recent call last):
File "/shared/ifbstor1/software/miniconda/envs/pyani-0.2.10/bin/average_nucleotide_identity.py", line 977, in <module>
draw(methods[args.method][1], gfmt)
File "/shared/ifbstor1/software/miniconda/envs/pyani-0.2.10/bin/average_nucleotide_identity.py", line 800, in draw
params_mpl(df)[filestem],
File "/shared/ifbstor1/software/miniconda/envs/pyani-0.2.10/lib/python3.9/site-packages/pyani/pyani_config.py", line 109, in params_mpl
return {'ANIb_alignment_lengths': ('afmhot', df.values.min(),
File "/shared/ifbstor1/software/miniconda/envs/pyani-0.2.10/lib/python3.9/site-packages/numpy/core/_methods.py", line 43, in _amin
return umr_minimum(a, axis, None, out, keepdims, initial, where)
ValueError: zero-size array to reduction operation minimum which has no identity
srun: error: cpu-node-11: task 0: Exited with exit code 1
~
pourriez vous m'aider ?
merci pour votre retour
Chloé
