Hi,
When I tried to import the raw data of a public study (MTBLS1) from MetaboLights using the Aspera download, I got the error:
no ascp in (/shared/mfs/data/galaxy/mutable-data/dependencies/conda/envs/_isatools@0.10.3/bin:/shared/mfs/data/galaxy/mutable-data/dependencies/_conda/condabin:/shared/mfs/data/galaxy/.venv/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/
Any help is appreciated!
Thank you,
Eleni
Hello Eleni,
Yes, it seems there is an issue with Aspera (ascp).
Meanwhile, could you try with Downloader: "wget" (instead of Aspera) ?
Best regards,
Hi,
Yes I tried both options. With wget I got this error:
[/shared/mfs/data/galaxy/jobs/000/136/136913/working/dataset_526126_files/MTBLS1.zip]
End-of-central-directory signature not found. Either this file is not
a zipfile, or it constitutes one disk of a multi-part archive. In the
latter case the cent
Thank you,
Eleni
It works on my side with the parameters below:
| Input Parameter | Value |
|---|---|
| Study name | MTBLS1 |
| Study type | Public |
| Downloader | wget |
| Token | Empty. |
| Content to download | Full study including raw data and ISA-Tab metadata. |
| factor_slicing | |
| Factor title | Empty. |
| Factor value | Empty. |
Could you give me your input fields ?
I have used the same input parameters plus my token id in MetaboLights. I re-run it then without the token and it worked! Thank you!
Great. Good news.
Maybe @gildaslecorguille or @dchristiany know what to do with the Aspera issue ?
Or maybe @pkrog 