DDA data processing

Hi support,
I have a question regarding processing DDA data. Once I perform findChromPeaks the MSMS part of my data disappear (which do not happen when I do the same thing in R). Is there any way to keep this information throughout the all workflow?


Loic Mervant


You can keep your MSMS if you use msPurity workflow available on W4M.

1- do your usual xcms workflow (Including you DDA files)
2- launch MSMS analysis with mspurity tools
3- merge xcms output and mspurity ones with frag4features

Un exemple Galaxy | France | Published Workflow | Workflow XCMS_CAMERA_msPurity


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Thanks Yann!