Diamond error on galaxy.fr

Galaxy
1

Hallo,

I got an error with Diamond only on Galaxy.fr

The tool id: toolshed.g2.bx.psu.edu/repos/bgruening/diamond/bg_diamond/2.1.13+galaxy1

and the job id: 6867817 (dc44c03e082d072c)

It’s not part of a pipeline. I was able to run the same on galaxy.eu.

I will have classes next week, so it would be great if it would work on …fr, since other commands that I need are not available on galaxy.eu

Best and thanks for your help

Achim

2

Here is the linked standard error:
/shared/ifbstor1/galaxy/datasets2/jobs/006/867/6867817/tool_script.sh: line 10: diamond: command not found
/shared/ifbstor1/galaxy/datasets2/jobs/006/867/6867817/tool_script.sh: line 11: diamond: command not found

3

It's fixed.
It should work now.
Can you confirm this for me?
Thomas

4

Hello,

Yes it works.

Thanks a lot and best

Achim