Difficulties importing NMR data (transfered from Julie.W)

Workflow4Metabolomics
1

Hi,
I am afraid I can't even get past first base! I have a zipped file containing data for 8 H1 NMR spectra that do not have a title file in the pdata/1 folder, otherwise the format looks as suggested (see screenshot below). I have tried every possible combination of TRUE/FALSE for the subdirectories/Use (sub)directories names as FID names? input but always get the error:
An error occurred with this dataset:
Error in ReadFids(path = path, l = l, subdirs = subdirs, dirs.names = dirs.names) :
No valid fid in /shared/ifbstor1/galaxy/jobs/002/170/2170026/working/10
Execution halted

Can you tell me where I am going wrong?

Best wishes
Julie

2

Screenshot 2022-11-21 at 10.47
Screenshot 2022-11-21 at 10.471676×1294 159 KB

3

Hi Julie,

Could you please share you history with me (): I'll have a look at your problems.
Sincerly

Marie

4

Julie,

My username is mtremblayfranco

5

Thank you, I think I have shared my history with you.

Julie

6

[url: Galaxy | France | Published History | Unnamed history]

7

Hi Marie,
did you get my shared history? I am not sure if I did it correctly. It seemed to want a user's email address, which is why I copied the link.

Best wishes
julie