Bonjour,
Depuis quelques jours j'ai une erreur quand je lance des jobs avec sbatch.
Voici le message d'erreur :
/shared/software/modules/4.6.1/init/bash: line 37: /usr/bin/tclsh: No such file or directory
environment: line 38: /usr/bin/tclsh: No such file or directory
Snakemake version
/var/spool/slurm/slurmd/job42951081/slurm_script: line 13: snakemake: command not found
SLURM version
/var/spool/slurm/slurmd/job42951081/slurm_script: line 15: srun: command not found
Running Snakemake pipeline...
/var/spool/slurm/slurmd/job42951081/slurm_script: line 18: snakemake: command not found
sbatch -p long -A landrec launcher_test_local.sh
Le script :
#!/bin/bash
#SBATCH --mail-user=thomas.brazier@univ-rennes.fr
#SBATCH --mail-type=all
#SBATCH --cpus-per-task=8
#SBATCH --mem=120GB
#SBATCH --time=20-60:00:00
#SBATCH --job-name=evolsv-test
#SBATCH --output=log/slurm-%A.out
module load snakemake
echo "Snakemake version"
snakemake --version
echo "SLURM version"
srun --version
echo "Running Snakemake pipeline..."
snakemake -s workflow/Snakefile --configfile config/config_test.yaml --use-conda --profile ./profiles/slurm --cores 1 --rerun-incomplete
Merci,
Thomas