Erreur LC_CTYPE UTF 8?

IFB Core Cluster
1

Bonjour,

J'ai une erreur un peu étrange et je ne sais pas trop pourquoi ni comment la corriger.
Quand je lance un script pour utiliser MultiQC il échoue au bout de 2 secondes avec cette erreur :

Traceback (most recent call last):
File "/shared/ifbstor1/software/miniconda/envs/multiqc-1.9/bin/multiqc", line 6, in
from multiqc.main import multiqc
File "/shared/ifbstor1/software/miniconda/envs/multiqc-1.9/lib/python3.6/site-packages/multiqc/main.py", line 44, in
multiqc.run_cli(prog_name='multiqc')
File "/shared/ifbstor1/software/miniconda/envs/multiqc-1.9/lib/python3.6/site-packages/click/core.py", line 829, in call
return self.main(*args, **kwargs)
File "/shared/ifbstor1/software/miniconda/envs/multiqc-1.9/lib/python3.6/site-packages/click/core.py", line 760, in main
_verify_python3_env()
File "/shared/ifbstor1/software/miniconda/envs/multiqc-1.9/lib/python3.6/site-packages/click/_unicodefun.py", line 130, in _verify_python3_env
" mitigation steps.{}".format(extra)
RuntimeError: Click will abort further execution because Python 3 was configured to use ASCII as encoding for the environment. Consult https://click.palletsprojects.com/python3/ for mitigation steps.

This system lists a couple of UTF-8 supporting locales that you can pick from. The following suitable locales were discovered: aa_DJ.utf8, aa_ER.utf8, aa_ET.utf8, af_ZA.utf8, am_ET.utf8, an_ES.utf8, ar_AE.utf8, ar_BH.utf8, ar_DZ.utf8, ar_EG.utf8, ar_IN.utf8, ar_IQ.utf8, ar_JO.utf8, ar_KW.utf8, ar_LB.utf8, ar_LY.utf8, ar_MA.utf8, ar_OM.utf8, ar_QA.utf8, ar_SA.utf8, ar_SD.utf8, ar_SY.utf8, ar_TN.utf8, ar_YE.utf8, as_IN.utf8, ast_ES.utf8, ayc_PE.utf8, az_AZ.utf8, be_BY.utf8, bem_ZM.utf8, ber_DZ.utf8, ber_MA.utf8, bg_BG.utf8, bho_IN.utf8, bn_BD.utf8, bn_IN.utf8, bo_CN.utf8, bo_IN.utf8, br_FR.utf8, brx_IN.utf8, bs_BA.utf8, byn_ER.utf8, ca_AD.utf8, ca_ES.utf8, ca_FR.utf8, ca_IT.utf8, crh_UA.utf8, cs_CZ.utf8, csb_PL.utf8, cv_RU.utf8, cy_GB.utf8, da_DK.utf8, de_AT.utf8, de_BE.utf8, de_CH.utf8, de_DE.utf8, de_LU.utf8, doi_IN.utf8, dv_MV.utf8, dz_BT.utf8, el_CY.utf8, el_GR.utf8, en_AG.utf8, en_AU.utf8, en_BW.utf8, en_CA.utf8, en_DK.utf8, en_GB.utf8, en_HK.utf8, en_IE.utf8, en_IN.utf8, en_NG.utf8, en_NZ.utf8, en_PH.utf8, en_SG.utf8, en_US.utf8, en_ZA.utf8, en_ZM.utf8, en_ZW.utf8, es_AR.utf8, es_BO.utf8, es_CL.utf8, es_CO.utf8, es_CR.utf8, es_CU.utf8, es_DO.utf8, es_EC.utf8, es_ES.utf8, es_GT.utf8, es_HN.utf8, es_MX.utf8, es_NI.utf8, es_PA.utf8, es_PE.utf8, es_PR.utf8, es_PY.utf8, es_SV.utf8, es_US.utf8, es_UY.utf8, es_VE.utf8, et_EE.utf8, eu_ES.utf8, fa_IR.utf8, ff_SN.utf8, fi_FI.utf8, fil_PH.utf8, fo_FO.utf8, fr_BE.utf8, fr_CA.utf8, fr_CH.utf8, fr_FR.utf8, fr_LU.utf8, fur_IT.utf8, fy_DE.utf8, fy_NL.utf8, ga_IE.utf8, gd_GB.utf8, gez_ER.utf8, gez_ET.utf8, gl_ES.utf8, gu_IN.utf8, gv_GB.utf8, ha_NG.utf8, he_IL.utf8, hi_IN.utf8, hne_IN.utf8, hr_HR.utf8, hsb_DE.utf8, ht_HT.utf8, hu_HU.utf8, hy_AM.utf8, ia_FR.utf8, id_ID.utf8, ig_NG.utf8, ik_CA.utf8, is_IS.utf8, it_CH.utf8, it_IT.utf8, iu_CA.utf8, iw_IL.utf8, ja_JP.utf8, ka_GE.utf8, kk_KZ.utf8, kl_GL.utf8, km_KH.utf8, kn_IN.utf8, ko_KR.utf8, kok_IN.utf8, ks_IN.utf8, ku_TR.utf8, kw_GB.utf8, ky_KG.utf8, lb_LU.utf8, lg_UG.utf8, li_BE.utf8, li_NL.utf8, lij_IT.utf8, lo_LA.utf8, lt_LT.utf8, lv_LV.utf8, mag_IN.utf8, mai_IN.utf8, mg_MG.utf8, mhr_RU.utf8, mi_NZ.utf8, mk_MK.utf8, ml_IN.utf8, mn_MN.utf8, mni_IN.utf8, mr_IN.utf8, ms_MY.utf8, mt_MT.utf8, my_MM.utf8, nb_NO.utf8, nds_DE.utf8, nds_NL.utf8, ne_NP.utf8, nhn_MX.utf8, niu_NU.utf
8, niu_NZ.utf8, nl_AW.utf8, nl_BE.utf8, nl_NL.utf8, nn_NO.utf8, nr_ZA.utf8, nso_ZA.utf8, oc_FR.utf8, om_ET.utf8, om_KE.utf8, or_IN.utf8, os_RU.utf8, pa_IN.utf8, pa_PK.utf8, pap_AN.utf8, pl_PL.utf8, ps_AF.utf8, pt_BR.utf8, pt_PT.utf8, ro_RO.utf8, ru_RU.utf8, ru_UA.utf8, rw_RW.utf8, sa_IN.utf8, sat_IN.utf8, sc_IT.utf8, sd_IN.utf8, se_NO.utf8, shs_CA.utf8, si_LK.utf8, sid_ET.utf8, sk_SK.utf8, sl_SI.utf8, so_DJ.utf8, so_ET.utf8, so_KE.utf8, so_SO.utf8, sq_AL.utf8, sq_MK.utf8, sr_ME.utf8, sr_RS.utf8, ss_ZA.utf8, st_ZA.utf8, sv_FI.utf8, sv_SE.utf8, sw_KE.utf8, sw_TZ.utf8, szl_PL.utf8, ta_IN.utf8, ta_LK.utf8, te_IN.utf8, tg_TJ.utf8, th_TH.utf8, ti_ER.utf8, ti_ET.utf8, tig_ER.utf8, tk_TM.utf8, tl_PH.utf8, tn_ZA.utf8, tr_CY.utf8, tr_TR.utf8, ts_ZA.utf8, tt_RU.utf8, ug_CN.utf8, uk_UA.utf8, unm_US.utf8, ur_IN.utf8, ur_PK.utf8, ve_ZA.utf8, vi_VN.utf8, wa_BE.utf8, wae_CH.utf8, wal_ET.utf8, wo_SN.utf8, xh_ZA.utf8, yi_US.utf8, yo_NG.utf8, yue_HK.utf8, zh_CN.utf8, zh_HK.utf8, zh_SG.utf8, zh_TW.utf8, zu_ZA.utf8

Click discovered that you exported a UTF-8 locale but the locale system could not pick up from it because it does not exist. The exported locale is 'C.UTF-8' but it is not supported

Je précise que j'ai déja lancé ce script sans aucun problème auparavant.
De plus si je tente une commande de type scp /path/ et que j'appuie sur tabulation pour l'autocomplétion j'obtiens cette erreur :

-bash: warning: setlocale: LC_CTYPE: cannot change locale (C.UTF-8)

Une idée pour résoudre ce problème ?

Merci par avance

2

Bonjour,

Vous avez probablement la variable d'environnement de votre shell LANG qui est defini à C.
Quelque par dans votre .bashrc ou dans votre script, quelque chose du genre:

export LANG=C

Une solution serait donc peut-etre de definir LANG à fr_FR.UTF-8

export LANG=fr_FR.UTF-8

( A priori les variables LC_* sont construite automatiquement à partir de la variable LANG, mais c'est aussi possible qu'elle soit defini en dur dans un fichier de conf )

3

Bonjour,

Merci après avoir rajouté dans mon .bashrc la commande

export LANG=fr_FR.UTF-8

ca marche à nouveau.

En revanche, et je ne sais pas si c'est lié, mais le cluster est globalement très lent sur pas mal de chose. Quand je me connecte il met très longtemps après avoir écrit les différents projets et la ligne :

Update: 2021-08-24 10:00 - default account in bold - More info: status_bars --help

et si jamais je fait un control + C parfois ca me rend la main rapidement sans rien faire de plus, mais parfois ca me met tout un tas d'erreur de type

traceback... python...

(désolé ca ne me le fait pas et je n'ai pas pensé à le copier).
Des commandes basiques comme ls sont lentes (quelques seconde pour les petits dossiers, mais pour un dossier avec 592 fichier ca à mis 2min53) et de manière systématique de même que l'autocomplétion des noms de dossiers ou fichiers ce qui à la longue est assez pénible. EN revanche si je fait un

ls | wc -l

c'est instantanée.

Pour info dans mon .bashrc j'ai ceci :

> # .bashrc
> 
> # Source global definitions
> if [ -f /etc/bashrc ]; then
>         . /etc/bashrc
> fi
> 
> # Uncomment the following line if you don't like systemctl's auto-paging feature:
> # export SYSTEMD_PAGER=
> 
> export LANG=fr_FR.UTF-8
> 
> # User specific aliases and functions
> 
> mes alias
> 
> PS1="\e[1;32m[\u@\h \W]\$ \e[0m"
> 
> # >>> conda initialize >>>
> # !! Contents within this block are managed by 'conda init' !!
> __conda_setup="$('/shared/ifbstor1/software/miniconda/bin/conda' 'shell.bash' 'hook' 2> /dev/null)"
> if [ $? -eq 0 ]; then
>     eval "$__conda_setup"
> else
>     if [ -f "/shared/ifbstor1/software/miniconda/etc/profile.d/conda.sh" ]; then
>         . "/shared/ifbstor1/software/miniconda/etc/profile.d/conda.sh"
>     else
>         export PATH="/shared/ifbstor1/software/miniconda/bin:$PATH"
>     fi
> fi
> unset __conda_setup
> # <<< conda initialize <<<

Merci par avance,

Quentin

4

Bonjour,

non il n'y a pas de lien entre votre .bashrc et les lenteurs du cluster.