I d like your help with a tool I am trying to install locally.
https://rMATS-turbo . It's for alternative Splicing detection.
I ran it by loading python/2.7, (only other option is 3.6).
I also installed in
/home/mk/Tools_Packages/gsl-2.6/ the GSL package and configured it because I didn't find any as a module.
If there is a way to call it from existing bin/ in cluster, let me know.
Other dependecies to verify if we have (please let me know how I could see myself in the future) :
- Cython (0.29.14)
- numpy (1.16.5)
- BLAS, LAPACK
- GCC (5.4.0)
- gfortran (Fortran 77)
- CMake (3.15.4)
I get the following error during the
rm: cannot remove ‘*.dylib’: No such file or directory make: [build] Error 1 (ignored) cd rMATS_C; make; make: Entering directory "/shared/ifbstor1/home/mkondili/Tools_Packages/rMATS_turbo_4.1.0/rMATS_C" .
some other src/ scripts are runnning , and then .. :
/usr/bin/ld: cannot find -lblas
/usr/bin/ld: cannot find -llapack
collect2: error: ld returned 1 exit status
make: *** [rMATSexe] Error 1
Do you have an idea if these errors are due to dependencies or something else wrong during installation ?
Is it possible to install it globally as module if all deps are existing
(at least for some time until I run it) ?