Bonjour
J'ai essayé d'installer sur un environnement conda l'outil ABC Enhancer Gene Dectection : Getting Started — ABC-Enhancer-Gene-Prediction documentation.
Dans le tuto, il passe par mamba mais je suis resté sur conda : conda env create -f workflow/envs/abcenv.yml
Cependant, cela n'a pas abouti a cause de conflits.
Y a t -il une alternative a son installation ?
Pour info voici le contenu de abcenv.yml :
name: abc-env
channels:
- bioconda
- conda-forge
- defaults
- anaconda
dependencies: - _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- _r-mutex=1.0.1=anacondar_1
- aioeasywebdav=2.4.0=pyha770c72_0
- aiohttp=3.9.5=py310h2372a71_0
- aiosignal=1.3.1=pyhd8ed1ab_0
- alabaster=0.7.16=pyhd8ed1ab_0
- alsa-lib=1.2.11=hd590300_1
- amply=0.1.6=pyhd8ed1ab_0
- appdirs=1.4.4=pyh9f0ad1d_0
- async-timeout=4.0.3=pyhd8ed1ab_0
- attmap=0.13.2=pyhd8ed1ab_0
- attr=2.5.1=h166bdaf_1
- attrs=23.2.0=pyh71513ae_0
- aws-c-auth=0.7.22=h96bc93b_2
- aws-c-cal=0.6.14=h88a6e22_1
- aws-c-common=0.9.19=h4ab18f5_0
- aws-c-compression=0.2.18=h83b837d_6
- aws-c-event-stream=0.4.2=ha47c788_12
- aws-c-http=0.8.1=h29d6fba_17
- aws-c-io=0.14.8=h21d4f22_5
- aws-c-mqtt=0.10.4=h759edc4_4
- aws-c-s3=0.5.9=h594631b_3
- aws-c-sdkutils=0.1.16=h83b837d_2
- aws-checksums=0.1.18=h83b837d_6
- aws-crt-cpp=0.26.9=he3a8b3b_0
- aws-sdk-cpp=1.11.329=hba8bd5f_3
- babel=2.14.0=pyhd8ed1ab_0
- bcrypt=4.1.3=py310he421c4c_0
- bedtools=2.26.0=0
- binutils_impl_linux-64=2.40=ha1999f0_1
- black=24.4.2=py310hff52083_0
- boto3=1.34.114=pyhd8ed1ab_0
- botocore=1.34.114=pyge310_1234567_0
- brotli=1.1.0=hd590300_1
- brotli-bin=1.1.0=hd590300_1
- brotli-python=1.1.0=py310hc6cd4ac_1
- bwidget=1.9.14=ha770c72_1
- bzip2=1.0.8=hd590300_5
- c-ares=1.28.1=hd590300_0
- ca-certificates=2024.2.2=hbcca054_0
- cachetools=5.3.3=pyhd8ed1ab_0
- cairo=1.18.0=h3faef2a_0
- certifi=2024.2.2=pyhd8ed1ab_0
- cffi=1.16.0=py310h2fee648_0
- charset-normalizer=3.3.2=pyhd8ed1ab_0
- click=8.1.7=unix_pyh707e725_0
- coin-or-cbc=2.10.10=h9002f0b_0
- coin-or-cgl=0.60.7=h516709c_0
- coin-or-clp=1.17.8=h1ee7a9c_0
- coin-or-osi=0.108.10=haf5fa05_0
- coin-or-utils=2.11.11=hee58242_0
- coincbc=2.10.10=0_metapackage
- colorama=0.4.6=pyhd8ed1ab_0
- configargparse=1.7=pyhd8ed1ab_0
- connection_pool=0.0.3=pyhd3deb0d_0
- contourpy=1.2.1=py310hd41b1e2_0
- cryptography=42.0.7=py310hb1bd9d3_0
- curl=8.8.0=he654da7_0
- cycler=0.12.1=pyhd8ed1ab_0
- datrie=0.8.2=py310h2372a71_7
- dbus=1.13.6=h5008d03_3
- defusedxml=0.7.1=pyhd8ed1ab_0
- dpath=2.1.6=pyha770c72_0
- dropbox=11.36.2=pyhd8ed1ab_0
- eido=0.2.2=pyhd8ed1ab_0
- exceptiongroup=1.2.0=pyhd8ed1ab_2
- execnet=2.1.1=pyhd8ed1ab_0
- expat=2.6.2=h59595ed_0
- filechunkio=1.8=py_2
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=h77eed37_2
- fontconfig=2.14.2=h14ed4e7_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- fonttools=4.52.4=py310hc51659f_0
- freetype=2.12.1=h267a509_2
- fribidi=1.0.10=h36c2ea0_0
- frozenlist=1.4.1=py310h2372a71_0
- ftputil=5.1.0=pyhd8ed1ab_0
- gcc=13.2.0=hc7bed06_7
- gcc_impl_linux-64=13.2.0=h9eb54c0_7
- gettext=0.22.5=h59595ed_2
- gettext-tools=0.22.5=h59595ed_2
- gflags=2.2.2=he1b5a44_1004
- gfortran_impl_linux-64=13.2.0=h738fc78_7
- gitdb=4.0.11=pyhd8ed1ab_0
- gitpython=3.1.43=pyhd8ed1ab_0
- glib=2.80.2=hf974151_0
- glib-tools=2.80.2=hb6ce0ca_0
- glog=0.7.0=hed5481d_0
- google-api-core=2.19.0=pyhd8ed1ab_0
- google-api-python-client=2.131.0=pyhd8ed1ab_0
- google-auth=2.29.0=pyhca7485f_0
- google-auth-httplib2=0.2.0=pyhd8ed1ab_0
- google-cloud-core=2.4.1=pyhd8ed1ab_0
- google-cloud-storage=2.16.0=pyhca7485f_0
- google-crc32c=1.1.2=py310hc5c09a0_5
- google-resumable-media=2.7.0=pyhd8ed1ab_0
- googleapis-common-protos=1.63.0=pyhd8ed1ab_0
- graphite2=1.3.13=h59595ed_1003
- grpcio=1.62.2=py310h1b8f574_0
- gst-plugins-base=1.24.4=h9ad1361_0
- gstreamer=1.24.4=haf2f30d_0
- gxx=13.2.0=hc7bed06_7
- gxx_impl_linux-64=13.2.0=h2a599c4_7
- harfbuzz=8.5.0=hfac3d4d_0
- htslib=1.20=h81da01d_0
- httplib2=0.22.0=pyhd8ed1ab_0
- humanfriendly=10.0=pyhd8ed1ab_6
- icu=73.2=h59595ed_0
- idna=3.7=pyhd8ed1ab_0
- imagesize=1.4.1=pyhd8ed1ab_0
- importlib-metadata=7.1.0=pyha770c72_0
- importlib_resources=6.4.0=pyhd8ed1ab_0
- iniconfig=2.0.0=pyhd8ed1ab_0
- jinja2=3.1.4=pyhd8ed1ab_0
- jmespath=1.0.1=pyhd8ed1ab_0
- jsonschema=4.22.0=pyhd8ed1ab_0
- jsonschema-specifications=2023.12.1=pyhd8ed1ab_0
- jupyter_core=5.7.2=py310hff52083_0
- kernel-headers_linux-64=2.6.32=he073ed8_17
- keyutils=1.6.1=h166bdaf_0
- kiwisolver=1.4.5=py310hd41b1e2_1
- krb5=1.21.2=h659d440_0
- lame=3.100=h166bdaf_1003
- lcms2=2.16=hb7c19ff_0
- ld_impl_linux-64=2.40=hf3520f5_1
- lerc=4.0.0=h27087fc_0
- libabseil=20240116.2=cxx17_h59595ed_0
- libarrow=16.1.0=hcb6531f_6_cpu
- libarrow-acero=16.1.0=hac33072_6_cpu
- libarrow-dataset=16.1.0=hac33072_6_cpu
- libarrow-substrait=16.1.0=h7e0c224_6_cpu
- libasprintf=0.22.5=h661eb56_2
- libasprintf-devel=0.22.5=h661eb56_2
- libblas=3.9.0=22_linux64_openblas
- libbrotlicommon=1.1.0=hd590300_1
- libbrotlidec=1.1.0=hd590300_1
- libbrotlienc=1.1.0=hd590300_1
- libcap=2.69=h0f662aa_0
- libcblas=3.9.0=22_linux64_openblas
- libclang-cpp15=15.0.7=default_h127d8a8_5
- libclang13=18.1.6=default_h5d6823c_0
- libcrc32c=1.1.2=h9c3ff4c_0
- libcups=2.3.3=h4637d8d_4
- libcurl=8.8.0=hca28451_0
- libdeflate=1.20=hd590300_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=hd590300_2
- libevent=2.1.12=hf998b51_1
- libexpat=2.6.2=h59595ed_0
- libffi=3.4.2=h7f98852_5
- libflac=1.4.3=h59595ed_0
- libgcc=7.2.0=h69d50b8_2
- libgcc-devel_linux-64=13.2.0=hceb6213_107
- libgcc-ng=13.2.0=h77fa898_7
- libgcrypt=1.10.3=hd590300_0
- libgettextpo=0.22.5=h59595ed_2
- libgettextpo-devel=0.22.5=h59595ed_2
- libgfortran-ng=13.2.0=h69a702a_7
- libgfortran5=13.2.0=hca663fb_7
- libglib=2.80.2=hf974151_0
- libgomp=13.2.0=h77fa898_7
- libgoogle-cloud=2.24.0=h2736e30_0
- libgoogle-cloud-storage=2.24.0=h3d9a0c8_0
- libgpg-error=1.49=h4f305b6_0
- libgrpc=1.62.2=h15f2491_0
- libiconv=1.17=hd590300_2
- libjpeg-turbo=3.0.0=hd590300_1
- liblapack=3.9.0=22_linux64_openblas
- liblapacke=3.9.0=22_linux64_openblas
- libllvm15=15.0.7=hb3ce162_4
- libllvm18=18.1.6=hb77312f_0
- libnghttp2=1.58.0=h47da74e_1
- libnsl=2.0.1=hd590300_0
- libogg=1.3.4=h7f98852_1
- libopenblas=0.3.27=pthreads_h413a1c8_0
- libopus=1.3.1=h7f98852_1
- libparquet=16.1.0=h6a7eafb_6_cpu
- libpng=1.6.43=h2797004_0
- libpq=16.3=ha72fbe1_0
- libprotobuf=4.25.3=h08a7969_0
- libre2-11=2023.09.01=h5a48ba9_2
- libsanitizer=13.2.0=h6ddb7a1_7
- libsndfile=1.2.2=hc60ed4a_1
- libsodium=1.0.18=h36c2ea0_1
- libsqlite=3.45.3=h2797004_0
- libssh2=1.11.0=h0841786_0
- libstdcxx-devel_linux-64=13.2.0=hceb6213_107
- libstdcxx-ng=13.2.0=hc0a3c3a_7
- libsystemd0=255=h3516f8a_1
- libthrift=0.19.0=hb90f79a_1
- libtiff=4.6.0=h1dd3fc0_3
- libutf8proc=2.8.0=h166bdaf_0
- libuuid=2.38.1=h0b41bf4_0
- libvorbis=1.3.7=h9c3ff4c_0
- libwebp-base=1.4.0=hd590300_0
- libxcb=1.15=h0b41bf4_0
- libxcrypt=4.4.36=hd590300_1
- libxkbcommon=1.7.0=h662e7e4_0
- libxml2=2.12.7=hc051c1a_0
- libzlib=1.2.13=h4ab18f5_6
- logmuse=0.2.6=pyh8c360ce_0
- lz4-c=1.9.4=hcb278e6_0
- macs2=2.2.9.1=py310h4b81fae_0
- make=4.3=hd18ef5c_1
- markdown-it-py=3.0.0=pyhd8ed1ab_0
- markupsafe=2.1.5=py310h2372a71_0
- matplotlib=3.8.4=py310hff52083_2
- matplotlib-base=3.8.4=py310hef631a5_2
- mdurl=0.1.2=pyhd8ed1ab_0
- mpg123=1.32.6=h59595ed_0
- multidict=6.0.5=py310h2372a71_0
- munkres=1.0.7=py_1
- mypy_extensions=1.0.0=pyha770c72_0
- mysql-common=8.3.0=hf1915f5_4
- mysql-libs=8.3.0=hca2cd23_4
- natsort=8.4.0=pyhd8ed1ab_0
- nbformat=5.10.4=pyhd8ed1ab_0
- ncls=0.0.68=py310h4b81fae_2
- ncurses=6.5=h59595ed_0
- nspr=4.35=h27087fc_0
- nss=3.100=hca3bf56_0
- numpy=1.26.4=py310hb13e2d6_0
- oauth2client=4.1.3=py_0
- openjpeg=2.5.2=h488ebb8_0
- openssl=3.3.0=h4ab18f5_3
- orc=2.0.1=h17fec99_1
- packaging=24.0=pyhd8ed1ab_0
- pandas=2.2.2=py310hf9f9076_1
- pango=1.52.2=ha41ecd1_0
- paramiko=3.4.0=pyhd8ed1ab_0
- pathspec=0.12.1=pyhd8ed1ab_0
- patsy=0.5.6=pyhd8ed1ab_0
- pcre2=10.43=hcad00b1_0
- peppy=0.40.2=pyhd8ed1ab_0
- pillow=10.3.0=py310hf73ecf8_0
- pip=24.0=pyhd8ed1ab_0
- pixman=0.43.2=h59595ed_0
- pkgutil-resolve-name=1.3.10=pyhd8ed1ab_1
- plac=1.4.3=pyhd8ed1ab_0
- platformdirs=4.2.2=pyhd8ed1ab_0
- pluggy=1.5.0=pyhd8ed1ab_0
- ply=3.11=pyhd8ed1ab_2
- prettytable=3.10.0=pyhd8ed1ab_0
- proto-plus=1.23.0=pyhd8ed1ab_0
- protobuf=4.25.3=py310ha8c1f0e_0
- psutil=5.9.8=py310h2372a71_0
- pthread-stubs=0.4=h36c2ea0_1001
- pulp=2.7.0=py310hff52083_1
- pulseaudio-client=17.0=hb77b528_0
- pyarrow=16.1.0=py310h17c5347_1
- pyarrow-core=16.1.0=py310h6f79a3a_1_cpu
- pyasn1=0.6.0=pyhd8ed1ab_0
- pyasn1-modules=0.4.0=pyhd8ed1ab_0
- pybigwig=0.3.22=py310h79000e5_2
- pycparser=2.22=pyhd8ed1ab_0
- pygments=2.18.0=pyhd8ed1ab_0
- pynacl=1.5.0=py310h2372a71_3
- pyopenssl=24.0.0=pyhd8ed1ab_0
- pyparsing=3.1.2=pyhd8ed1ab_0
- pyqt=5.15.9=py310h04931ad_5
- pyqt5-sip=12.12.2=py310hc6cd4ac_5
- pyranges=0.0.129=pyh7cba7a3_0
- pyrle=0.0.40=py310h4b81fae_0
- pysam=0.22.1=py310h41dec4a_0
- pysftp=0.2.9=py_1
- pysocks=1.7.1=pyha2e5f31_6
- pytest=8.2.1=pyhd8ed1ab_0
- pytest-xdist=3.5.0=pyhd8ed1ab_0
- python=3.10.14=hd12c33a_0_cpython
- python-dateutil=2.9.0=pyhd8ed1ab_0
- python-fastjsonschema=2.19.1=pyhd8ed1ab_0
- python-irodsclient=2.0.1=pyhd8ed1ab_0
- python-tzdata=2024.1=pyhd8ed1ab_0
- python_abi=3.10=4_cp310
- pytz=2024.1=pyhd8ed1ab_0
- pyu2f=0.1.5=pyhd8ed1ab_0
- pyyaml=6.0.1=py310h2372a71_1
- qt-main=5.15.8=hc9dc06e_21
- r-base=4.3.3=hf0d99cb_1
- re2=2023.09.01=h7f4b329_2
- readline=8.2=h8228510_1
- referencing=0.35.1=pyhd8ed1ab_0
- requests=2.32.2=pyhd8ed1ab_0
- reretry=0.11.8=pyhd8ed1ab_0
- rich=13.7.1=pyhd8ed1ab_0
- rpds-py=0.18.1=py310he421c4c_0
- rsa=4.9=pyhd8ed1ab_0
- s2n=1.4.15=he19d79f_0
- s3transfer=0.10.1=pyhd8ed1ab_0
- samtools=1.20=h50ea8bc_0
- scipy=1.13.1=py310h93e2701_0
- seaborn=0.13.2=hd8ed1ab_2
- seaborn-base=0.13.2=pyhd8ed1ab_2
- sed=4.8=he412f7d_0
- setuptools=70.0.0=pyhd8ed1ab_0
- setuptools-scm=8.1.0=pyhd8ed1ab_0
- sip=6.7.12=py310hc6cd4ac_0
- six=1.16.0=pyh6c4a22f_0
- slacker=0.14.0=py_0
- smart_open=6.4.0=pyhd8ed1ab_0
- smmap=5.0.0=pyhd8ed1ab_0
- snakemake=7.32.4=hdfd78af_1
- snakemake-minimal=7.32.4=pyhdfd78af_1
- snappy=1.2.0=hdb0a2a9_1
- snowballstemmer=2.2.0=pyhd8ed1ab_0
- sorted_nearest=0.0.39=py310h4b81fae_1
- sphinx=7.3.7=pyhd8ed1ab_0
- sphinxcontrib-applehelp=1.0.8=pyhd8ed1ab_0
- sphinxcontrib-devhelp=1.0.6=pyhd8ed1ab_0
- sphinxcontrib-htmlhelp=2.0.5=pyhd8ed1ab_0
- sphinxcontrib-jsmath=1.0.1=pyhd8ed1ab_0
- sphinxcontrib-qthelp=1.0.7=pyhd8ed1ab_0
- sphinxcontrib-serializinghtml=1.1.10=pyhd8ed1ab_0
- statsmodels=0.14.2=py310h261611a_0
- stone=3.3.6=pyhd8ed1ab_0
- stopit=1.1.2=py_0
- sysroot_linux-64=2.12=he073ed8_17
- tabix=1.11=hdfd78af_0
- tabulate=0.9.0=pyhd8ed1ab_1
- throttler=1.2.2=pyhd8ed1ab_0
- tk=8.6.13=noxft_h4845f30_101
- tktable=2.10=h0c5db8f_5
- toml=0.10.2=pyhd8ed1ab_0
- tomli=2.0.1=pyhd8ed1ab_0
- toposort=1.10=pyhd8ed1ab_0
- tornado=6.4=py310h2372a71_0
- traitlets=5.14.3=pyhd8ed1ab_0
- typing-extensions=4.11.0=hd8ed1ab_0
- typing_extensions=4.11.0=pyha770c72_0
- tzdata=2024a=h0c530f3_0
- ubiquerg=0.7.0=pyhd8ed1ab_0
- unicodedata2=15.1.0=py310h2372a71_0
- uritemplate=4.1.1=pyhd8ed1ab_0
- urllib3=2.2.1=pyhd8ed1ab_0
- veracitools=0.1.3=py_0
- wcwidth=0.2.13=pyhd8ed1ab_0
- wheel=0.43.0=pyhd8ed1ab_1
- wrapt=1.16.0=py310h2372a71_0
- xcb-util=0.4.0=hd590300_1
- xcb-util-image=0.4.0=h8ee46fc_1
- xcb-util-keysyms=0.4.0=h8ee46fc_1
- xcb-util-renderutil=0.3.9=hd590300_1
- xcb-util-wm=0.4.1=h8ee46fc_1
- xkeyboard-config=2.41=hd590300_0
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.1.1=hd590300_0
- xorg-libsm=1.2.4=h7391055_0
- xorg-libx11=1.8.9=h8ee46fc_0
- xorg-libxau=1.0.11=hd590300_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h0b41bf4_2
- xorg-libxrender=0.9.11=hd590300_0
- xorg-libxt=1.3.0=hd590300_1
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h0b41bf4_1003
- xorg-xf86vidmodeproto=2.3.1=h7f98852_1002
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.6=h166bdaf_0
- yaml=0.2.5=h7f98852_2
- yarl=1.9.4=py310h2372a71_0
- yte=1.5.4=pyha770c72_0
- zipp=3.17.0=pyhd8ed1ab_0
- zlib=1.2.13=h4ab18f5_6
- zstd=1.5.6=ha6fb4c9_0
- hic-straw==1.3.1
- pip:
- docutils==0.20.1
- pybind11==2.12.0
- sphinx-rtd-theme==2.0.0
- sphinxcontrib-jquery==4.1
Merci d'avanve pour votre aide
Thibaut