Installation de l'outil netMHCpan4.0

Bonjour à tous,
Pour certaines analyses, j'aurais besoin d'utiliser l'outil netMHCpan4.0 (NetMHCpan-4.0: Improved Peptide-MHC Class I Interaction Predictions Integrating Eluted Ligand and Peptide Binding Affinity Data - PubMed).
Serait-il possible de l'installer sur le cluster?
En vous remerciant d'avance pour votre aide,
Marianne

Bonjour,

Pas sur que ce soit possible, après une rapide recherche sur internet, je n'ai pas trouver de procédure d'installation, ni même le code source.

Si vous avez plus d'info, ca pourrait nous aider, merci !

Bonjour !
Désolée pour l'imprécision. Est-ce que vous avez les informations nécessaires ici?

Merci encore pour votre aide!
Marianne

@Francois Nous allons être sur le modèle tools/signalp/5.0 · master · Institut Français de Bioinformatique / Cluster / tools · GitLab
L'archive doit être téléchargé en amont

Bonjour,
quand sait-on que l'installation de l'outil est ok ? j'ai cherché dans les module avail mais je n'ai pas vu qqch qui ressemblait au netMHCpan-4.1 (mais je n'ai peut-être pas bien cherché). Ou peut-être un problème ? Je me permets cette question car on aimerait bien l'utiliser avec @mburbage ...

Bonjour @clairetn,

L'installation est en cours (désolé pour le temps de réponse, nous avons dû notamment faire approuver l'email institutionnel).

Super ! Merci !
Désolée pour mon impatience, je n'avais pas pensé au délai du fait de l'accord institutionnel.

Bonjour @mburbage @clairetn ,

netMHCpan est maintenant disponible:

module load netmhcpan/4.1b

A noter que l'outil est résevé à une usage académique (academic users only).

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2 J'aime

Super !
Merci à vous !
Claire.

Merci beaucoup!!