Bonjour,
Je rebondis sur cette demande:
Installation de pgap - IFB Core Cluster - IFB Community Support (france-bioinformatique.fr)
Merci d avance,
Frederic Chaux
Precision: j ai essaye de l installer en local, ca prend une place enorme.. Ensuite ca tourne pendant un moment puis il y a un tas d erreurs (je colle ci-dessous le debut, la plus pertinente etant a mon avis celle en gras):
Est ce que qqun a deja fait tourner pgap avec succes?
Cdlt,
Fred
time="2024-02-29T17:19:19+01:00" level=warning msg=""/run/user/160839" directory set by $XDG_RUNTIME_DIR does not exist. Either create the directory or unset $XDG_RUNTIME_DIR.: stat /run/user/160839: no such file or directory: Trying to pull image in the event that it is a public image."
PGAP version 2023-10-03.build7061 is up to date.
Output will be placed in: /shared/ifbstor1/projects/unstableyeast/Fred_bacterial_genomes/MAG_586_3142.fa_pgap
PGAP failed, docker exited with rc = 1
Printing log starting from failed job:
[2024-02-29 17:20:17] DEBUG [step pgapx_yaml_ctl] job input {
...