Bonsoir,
J ai besoin de votre aide pour comprendre pourquoi je peux pas travailler sur une application sur R-studio qui s appelle Cerebro. J' ai pu l' installer et lancer, mais la fenêtre ferme juste après le téléchargement des données (étape Load Data sur l app). J ai essayé avec des data exemples par leur repo github ( Cerebro/cerebro_GSE108041_2019-10-10.crb at master · romanhaa/Cerebro · GitHub ).
Les messages sur la console de Rstudio ci-dessous :
# BiocManager::install("cerebroApp")
# library(cerebroApp)
# launchCerebro()
##---------------------------------------------------------------------------##
## Launching Cerebro v1.3
##---------------------------------------------------------------------------##
Listening on http://127.0.0.1:4062
[2021-11-04 17:40:06] File to load: /shared/ifbstor1/home/mkondili/R/x86_64-conda-linux-gnu-library/4.0/cerebroApp/extdata/v1.3/example.crb
class: Cerebro_v1.3
cerebroApp version: 1.3.0
experiment name: pbmc_10k_v3
organism: hg
date of analysis: 2020-09-21
date of export: 2020-09-21
number of cells: 501
number of genes: 1,000
grouping variables (3): sample, seurat_clusters, cell_type_singler_blueprintencode_main
cell cycle variables (1): Phase
projections (4): tSNE, tSNE_3D, UMAP, UMAP_3D
trees (3): sample, seurat_clusters, cell_type_singler_blueprintencode_main
most expressed genes: sample, seurat_clusters, cell_type_singler_blueprintencode_main
marker genes:
- cerebro_seurat (3): sample, seurat_clusters, cell_type_singler_blueprintencode_main
enriched pathways:
- cerebro_seurat_enrichr (3): sample, seurat_clusters, cell_type_singler_blueprintencode_main,
- cerebro_GSVA (3): sample, seurat_clusters, cell_type_singler_blueprintencode_main
trajectories:
- monocle2 (2): all_cells, subset_of_cells
extra material:
- tables (1): SingleR_results
[2021-11-04 17:40:06] Format of expression data: dgCMatrix
[2021-11-04 17:40:06] Active tab: loadData
[2021-11-04 17:40:08] WebGL status: TRUE
[2021-11-04 17:40:08] Show hover info status: TRUE
[2021-11-04 17:40:18] Active tab: analysis_info
[2021-11-04 17:40:46] Active tab: markerGenes
[2021-11-04 17:40:50] Active tab: loadData
[2021-11-04 17:41:03] File to load: /tmp/RtmpwbDS1r/2eb8e20b417f7f86b45debe0/0.crb
Warning: Error in message: attempt to apply non-function
[No stack trace available]
Warning: Error in message: attempt to apply non-function
74: <Anonymous>
Warning: Error in message: attempt to apply non-function
108: <Anonymous>
Warning: Error in message: attempt to apply non-function
74: <Anonymous>
Warning: Error in message: attempt to apply non-function
104: <Anonymous>
Warning: Error in message: attempt to apply non-function
104: <Anonymous>
Juste après le message : " File to load: " , la fenêtre s éteint, mais la console reste occupé.
Est-ce un problème de mémoire ou de l'application graphique ?
> sessionInfo()
R version 4.0.3 (2020-10-10)
Platform: x86_64-conda-linux-gnu (64-bit)
Running under: CentOS Linux 7 (Core)
Matrix products: default
BLAS/LAPACK: /shared/ifbstor1/software/miniconda/envs/r-4.0.3/lib/libopenblasp-r0.3.10.so
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] shiny_1.7.1 cerebroApp_1.3.1