Hello,
I'm trying to use maker on the cluster, but Ican't even see the configuration files, how can use them in the cluster? when I type "maker -CTL" I get this error:
Possible precedence issue with control flow operator at /shared/ifbstor1/software/miniconda/envs/maker-3.01.03/lib/site_perl/5.26.2/Bio/DB/IndexedBase.pm line 805.
Thank you so much in advance for any help
Hello,
It seems just a warning and the software runs without issue.
So if you execute maker -CTL, the maker*.ctl files are created.
It seems linked to a Bioperl issue: Possible precedence issue with control flow operator at Bio/DB/IndexedBase.pm line 805 · Issue #355 · bioperl/bioperl-live · GitHub (with a workaround: Possible precedence issue with control flow operator · Issue #914 · Ensembl/ensembl-vep · GitHub).
To fix it, you can try to contact the software developers (Yandell Lab - Software - MAKER)