I'm fresh user of galaxy which i would like to use for GC-MS analysis. I convert the .D to MZxml and CDF which are both ok to upload but when i tried to excecute the older version i get this
An error occurred while running the tool toolshed.g2.bx.psu.edu/repos/yguitton/metams_rungc/metams_runGC/2.1.1.
Execution resulted in the following messages:
Fatal error: Exit code 1 ()
Error in matrix(unlist(lev), nrow = length(lev), byrow = TRUE) :
'data' must be of a vector type, was 'NULL'
Calls: -> as.data.frame -> matrix
In addition: Warning message:
In unzip(listArguments[["zipfile"]]) : error 1 in extracting from zip file
while importation was ok...
after transformation to xset.RDATA with XCMS I also get the following error....
replacing previous import 'xcms::plot' by 'graphics::plot' when loading 'CAMERA'
Note: you might want to set/adjust the 'sampclass' of the returned xcmSet object before proceeding with the analysis.
Error: You need more than 1 file to be able to run metaMS
Could anyone give me a piece of advice ?
Thank you very much,