I tried to test the workflow by processing my data using the same method. Now I've got a new error message:
Loading required package: methods
Loading required package: CAMERA
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:parallel’:
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from ‘package:stats’:
IQR, mad, sd, var, xtabs
The following objects are masked from ‘package:base’:
anyDuplicated, append, as.data.frame, basename, cbind, colMeans,
colnames, colSums, dirname, do.call, duplicated, eval, evalq,
Filter, Find, get, grep, grepl, intersect, is.unsorted, lapply,
lengths, Map, mapply, match, mget, order, paste, pmax, pmax.int,
pmin, pmin.int, Position, rank, rbind, Reduce, rowMeans, rownames,
rowSums, sapply, setdiff, sort, table, tapply, union, unique,
unsplit, which, which.max, which.min
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Loading required package: xcms
Loading required package: mzR
Loading required package: Rcpp
Error: package or namespace load failed for ‘mzR’ in dyn.load(file, DLLpath = DLLpath, ...):
unable to load shared object '/shared/mfs/data/galaxy/mutable-data/dependencies/_conda/envs/mulled-v1-0ae988a4d0b8164ca82b07484a596bc492f704ad86ba31c19cdaca893b7f2f88/lib/R/library/mzR/libs/mzR.so':
libnetcdf.so.11: cannot open shared object file: No such file or directory
Error: package ‘mzR’ could not be loaded
Execution halted