Hi,
Would it be possible to install ngsTools: GitHub - mfumagalli/ngsTools: Programs to analyse NGS data for population genetics purposes ?
Thank you
Ana
Hi,
Anyone can assist me with this? I actually just really need angsd and the problem is either with htslib or the compiler. I tried to install by compiling htslib (which I couldn't) and by loading the htslib module but neither worked:
/usr/bin/ld: cannot find -lbz2
/usr/bin/ld: cannot find -llzma
ping @team.ifbcorecluster
Thanks for any help I can get.
Cheers,
Ana
Hello Ana,
ngsTools isn’t provided as a package (with conda or with a container). So it requests time for us to deploy it. Maybe, you can ask for a package (with conda, docker, singularity or other) to the developer or any motivated person.
In the other way, angsd is available through conda (bioconda repository): https://anaconda.org/bioconda/angsd. So it’s easy for us, and we have just installed it: add angsd/0.935 (!582) · Merge requests · Institut Français de Bioinformatique / Cluster / tools · GitLab
To use it :
module load angsd/0.935
Best regards,