ngsTools installation

Would it be possible to install ngsTools: GitHub - mfumagalli/ngsTools: Programs to analyse NGS data for population genetics purposes ?

Thank you

ping @team.ifbcorecluster

Anyone can assist me with this? I actually just really need angsd and the problem is either with htslib or the compiler. I tried to install by compiling htslib (which I couldn't) and by loading the htslib module but neither worked:
/usr/bin/ld: cannot find -lbz2
/usr/bin/ld: cannot find -llzma

ping @team.ifbcorecluster

Thanks for any help I can get.

Hello Ana,

ngsTools isn’t provided as a package (with conda or with a container). So it requests time for us to deploy it. Maybe, you can ask for a package (with conda, docker, singularity or other) to the developer or any motivated person.

In the other way, angsd is available through conda (bioconda repository): So it’s easy for us, and we have just installed it: add angsd/0.935 (!582) · Merge requests · Institut Français de Bioinformatique / Cluster / tools · GitLab

To use it :

module load angsd/0.935

Best regards,