Bonjour @team.software ,
Je viens d'utiliser circlator pour son option fixstart avec la commande suivante:
srun circlator fixstart --genes_fa circlator_dnaA_nt.fasta assembly.fasta
et j'ai ce message d'erreur
Traceback (most recent call last):
File "/shared/ifbstor1/software/miniconda/envs/circlator-1.5.5/bin/circlator", line 57, in
exec('import circlator.tasks.' + task)
File "", line 1, in
File "/shared/ifbstor1/software/miniconda/envs/circlator-1.5.5/site-packages/circlator/init.py", line 26, in
from circlator import *
File "/shared/ifbstor1/software/miniconda/envs/circlator-1.5.5/site-packages/circlator/bamfilter.py", line 2, in
import pysam
File "/shared/ifbstor1/software/miniconda/envs/circlator-1.5.5/site-packages/pysam/init.py", line 5, in
from pysam.libchtslib import *
ModuleNotFoundError: No module named 'pysam.libchtslib'
srun: error: cpu-node-82: task 0: Exited with exit code 1
pourriez vous m'aider ?
Merci d'avance 
Chloé