Request to Increase Disk Quota for User `mabuelqumsan`

Galaxy
1

Dear Admin Team,

I hope this message finds you well.

While trying to install R packages on ondemand.cluster.france-bioinformatique.fr, specifically using:

r

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install.packages("devtools")
devtools::install_github("YuLab-SMU/DOSE")

I encountered the following error message indicating that my disk quota has been exceeded:

swift

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Warning in file.create(to[okay]) :
  cannot create file '/shared/home/mabuelqumsan/R/x86_64-conda-linux-gnu-library/4.4/00LOCK-Rcpp/00new/Rcpp/tinytest/test_xptr.R', reason 'Disk quota exceeded'
...
Error in file(datafile, "wb") : cannot open the connection
...
ERROR: lazy loading failed for package ‘Rcpp’

Additionally, I frequently see messages that my quota is exceeded when trying to start a new RStudio session.

Could you kindly increase my disk quota? My username is:

mabuelqumsan

I would greatly appreciate your assistance, as this is affecting my ability to run essential analyses.

Thank you very much for your support.

Best regards,
Mustafa AbuElqumsan

2

Dear Mustafa,

For this kind of request, please use the new support service for the IFB Core Cluster: https://support.cluster.france-bioinformatique.fr

Your quota for your home directory is indeed exceeded:

$ status_bars mabuelqumsan
microglia_subtypes_scrnaseq [--------------------]       0 /    2000 GB
                  rnaseqmva [###############-----]     392 /     500 GB

                       HOME [##------------------]      12 /     100 GB
                          - [####################]  100881 /  100000 FILES

The issue is not related to storage size, but to the number of files: 100881 files, which exceeds your quota of 100000 files.

Please clean up your home directory or move files to your project directory.
Most of the excess seems to come from the .conda directory, which contains around 72k files.

Best regards.

1 « J'aime »
3

Dear Dr. David Benaben,

Greetings, and many thanks for your prompt response and valuable guidance—it is greatly appreciated.

I have submitted a ticket to the new support service for the IFB Core Cluster via the following link: https://support.cluster.france-bioinformatique.fr.

Thank you especially for highlighting that the issue pertains more to the number of files than to storage size. I now understand that my current file count—100,881—exceeds the quota of 100,000 files. I will need to clean up my home directory accordingly.

I will review the files with Prof. Jacques van Helden to determine which ones can be deleted, as this is a shared project and I cannot proceed without consulting him.

Once again, thank you very much for your continued support and cooperation.

Warm regards,
Mustafa AbuElqumsan