Good afternoon @team.software !
I am working on the parasite Theileria annulata and I would like to use the signalP6 tool to predict the signal peptides of every protein.BioLib
If you could install the package on the cluster you would help me immensely
The proper channel to request it is:https://services.healthtech.dtu.dk/cgi-bin/sw_request
Installation instructions are here:
# SignalP 6.0 signal peptide prediction tool
These instructions refer to the Python package available for download at https://services.healthtech.dtu.dk/service.php?SignalP-6.0.
## Installation
SignalP 6.0 is distributed as a Python package.
1. Unpack the downloaded `tar.gz` file.
2. \[Optional\]: Create a python environment to install the package in.
3. Open the directory containing the downloaded package, and install it by executing the following command.
```
pip install signalp-6-package/
```
4. Copy the model files to the location at which the signalp module got installed. The model weight files are large, so this might take a while.
(Alternatively, you can copy the directory to any other location on your system and run later with `signalp6 --model_dir /path/to/models/`)
```
SIGNALP_DIR=$(python3 -c "import signalp; import os; print(os.path.dirname(signalp.__file__))" )
cp -r signalp-6-package/models/* $SIGNALP_DIR/model_weights/
```
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I have also downloaded the package here:
Thank you in advance!
Hello
SignalP 6.0 is already available on the IFB core cluster. Just load the module:
module load signalp/6.0
Best regards,
