Snakemake Disk quota exceeded error


I have a problem with my Disk quota exceeded:

Traceback (most recent call last):

  File "/shared/ifbstor1/software/miniconda/envs/snakemake-8.9.0/lib/python3.12/site-packages/snakemake/", line 2052, in args_to_api

  File "/shared/ifbstor1/software/miniconda/envs/snakemake-8.9.0/lib/python3.12/site-packages/snakemake/", line 589, in execute_workflow

  File "/shared/ifbstor1/software/miniconda/envs/snakemake-8.9.0/lib/python3.12/site-packages/snakemake/", line 1247, in execute
    raise e

  File "/shared/ifbstor1/software/miniconda/envs/snakemake-8.9.0/lib/python3.12/site-packages/snakemake/", line 1243, in execute
    success = self.scheduler.schedule()

  File "/shared/ifbstor1/software/miniconda/envs/snakemake-8.9.0/lib/python3.12/site-packages/snakemake/", line 306, in schedule

  File "/shared/ifbstor1/software/miniconda/envs/snakemake-8.9.0/lib/python3.12/site-packages/snakemake/", line 394, in run

  File "/shared/ifbstor1/software/miniconda/envs/snakemake-8.9.0/lib/python3.12/site-packages/snakemake_interface_executor_plugins/executors/", line 72, in run_jobs

  File "/shared/home/aabdalrahem/.local/lib/python3.12/site-packages/snakemake_executor_plugin_cluster_generic/", line 102, in run_job
    self.write_jobscript(job, jobscript)

  File "/shared/ifbstor1/software/miniconda/envs/snakemake-8.9.0/lib/python3.12/site-packages/snakemake_interface_executor_plugins/executors/", line 247, in write_jobscript
    with open(jobscript, "w") as f:

OSError: [Errno 122] Disk quota exceeded: '/shared/ifbstor1/projects/pucciniales_mat_genes/EvoMitoGeno/.snakemake/tmp.8ctqle_2/'

I still have a space: [#########-----------] 1895 / 4000 GB

lfs quota -h -p 100464 /shared/ifbstor1/home/aabdalrahem/
Disk quotas for prj 100464 (pid 100464):
     Filesystem    used   quota   limit   grace   files   quota   limit   grace
                 56.94G    100G    150G       -   91791  127786  217786       -

I already removed cache files and most of the temporary files I don't know what else can I remove from which partition and if there is any chance to increase my quota. Any advice would be appreciated.


Hello Ammar,

You have reached the quota of your project, in number of files (5 932 450 files, quota of 4 000 000)
To view: lfs quota -h -p 165792 /shared/projects/pucciniales_mat_genes

Disk quotas for prj 165792 (pid 165792):
     Filesystem    used   quota   limit   grace   files   quota   limit   grace
                 1.851T  3.906T  5.859T       - 5932450* 4000000 6000000    none

Please, clean some files in this project directory. Above all the funannotate results (with hundreds of thousands of fasta files...).

Best regards

Thanks for your help