@team.software Installation de Velocyto

IFB Core Cluster Tool or data bank request
1

Bonjour,

Serait-il possible d'installer Velocyto sur le cluster, svp ?
(https://anaconda.org/bioconda/velocyto.py)

Merci d'avance et bonne journée.

Olivier

2

Hop :
module load velocyto.py/0.17.17

3

Merci beaucoup ! :slight_smile:

4

Hello!
I have been trying to run velocyto but I am always getting the same error:
FileNotFoundError: [Errno 2] No such file or directory: 'samtools'

This is my script:
*#!/bin/bash
#SBATCH --cpus-per-task 8
#SBATCH --mem 32GB

cd /shared/projects/theileria_scrnaseq/velocyto/

module load velocyto.py/0.17.17
module load samtools/1.15.1

velocyto run -U -m ARS-UCD1.2.repeats.accessions.gtf
../bam/count_BL3_TBL3_1/possorted_genome_bam.bam
/shared/projects/theileria_host_pathogen/Genomes/Bt_Ta_fused.gtf*

I have been also trying to reinstall it in my own environment but it looks harder than if I just ask
What am I doing wrong?

Thanks