W4M xcms retcor :This job was terminated because it used more memory than it was allocated

Hello,
I wanted to perform the retention time correction on my xset.merged.groupChromPeaks.RData ( build on a list of 107 full scan) but I had those two error messages :
An error occurred while running the tool toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_retcor/abims_xcms_retcor/3.6.1+galaxy1.
and
This job was terminated because it used more memory than it was allocated.
Please click the bug icon to report this problem if you need help.

The job API ID is 6c2aa51cf3051ac4

As the reporting seems to be desactivated for this galaxy instance I wanted to know what are the solutions to this issue.

Thank you a lot for your time and help.

Thomas

Hi @ThomasY,

On our side, we will increase the among of memory that could be used by xcms_retcor.

It should be ok now.
xcms adjustRtime (retcor) can now use 96 GB of RAM. I hope that it will be enough :crossed_fingers:

1 J'aime

Bonjour,
Merci pour l’augmentation de la capacité.
J'ai une seconde erreur due cette fois-ci à l'outil CAMERA

" An error occurred while running the tool toolshed.g2.bx.psu.edu/repos/lecorguille/camera_annotate/abims_CAMERA_annotateDiffreport/2.2.6+camera1.46.0-galaxy0."

voici le message obtenu :

This job was terminated because it used more memory than it was allocated.
Please click the bug icon to report this problem if you need help.

Job API ID: 9091d40b7c5cd403

Serait-il possible d'augmenter également la RAM sur l'outil CAMERA ?

Merci beaucoup pour votre aide,

Cordialement,
Thomas YON (Ifremer Nantes)

Ping @team.galaxy :slight_smile:

Je passe annotateDiffreport à 96Go aussi, ça vous va?

1 J'aime

Merci ! Je relance le calcul.

@ThomasY désolé pour la confusion mais les modifications de @Lain ne sont actives que depuis quelques minutes.