Hello, I 'd like some more precisions concerning disk-space ,so that I can make sure in advance if I have enough space or not to run a new pipeline for alignment.
I think I have the same problem with new data-set now, that I ran in
$ mfsgetquota -h ./:
(current values | soft quota | hard quota)
inodes | 1.4Ki | - | - |
length | 167GiB | - | - |
size | 167GiB | - | - |
realsize | 335GiB | - | - |
I ve been trying to run nextflow only with STAR process again, on 2 files only: of 16Gb and 15Gb, respectively. (4 fq paired-end, 2 samples).
The command is exactly the same as before: --runThreadN 8, and
#SBATCH --mem-per-cpu 40GB
The nextflow.log loops over the 2 alignment tasks saying "RUNNING", over 1h30! (normally in 40min should be over per file)
The STAR log file finish the alignment and bin-sorting, but there is never a .bam file written.
What might be the reason of not writing the output ?
(job IDs : 13609072, 13609073)